Immunogenicity 9820

summary
Sample ID
3812
Response
Negative
Tumor Type
Bile duct cancer
Gene Symbol
FOXD2
Transcript ID
ENST00000334793
HLA INFO
DQA*01:03 / DQB*02:02
TCR INFO

No TCR info found!

T cell Tumor cell { DQA*01:03 DQB*02:02
sequence
Full length protein sequence (495 aa)
MTLGS
1
CCCEI
6
MSSES
11
SPAAL
16
SEADA
21
DIDVV
26
GGGSG
31
GGELP
36
ARSGP
41
RAPRD
46
VLPHG
51
HEPPA
56
EEAEA
61
DLAED
66
EEESG
71
GCSDG
76
EPRAL
81
ASRGA
86
AAAAG
91
SPGPG
96
AAAAR
101
GAAGP
106
GPGPP
111
SGGAA
116
TRSPL
121
VKPPY
126
SYIAL
131
ITMAI
136
LQSPK
141
KRLTL
146
SEICE
151
FISGR
156
FPYYR
161
EKFPA
166
WQNSI
171
RHNLS
176
LNDCF
181
VKIPR
186
EPGNP
191
GKGNY
196
WTLDP
201
ESADM
206
FDNGS
211
FLRRR
216
KRFKR
221
QPLPP
226
PHPHP
231
HPHPE
236
LLLRG
241
GAAAA
246
GDPGA
251
FLPGF
256
AAYGA
261
YGYGY
266
GLALP
271
AYGAP
276
PPGPA
281
PHPHP
286
HPHAF
291
AFAAA
296
AAAAP
301
CQLSV
306
PPGRA
311
AAPPP
316
GPPTA
321
SVFAG
326
AGSAP
331
APAPA
336
SGSGP
341
GPGPA
346
GLPAF
351
LGAEL
356
GCAKA
361
FYAAS
366
LSPPA
371
AGTAA
376
GLPTA
381
LLRQG
386
LKTDA
391
GGGAG
396
GGGAG
401
AGQRP
406
SFSID
411
HIMGH
416
GGGGA
421
APPGA
426
GEGSP
431
GPPFA
436
AAAGP
441
GGQAQ
446
VLAML
451
TAPAL
456
APVAG
461
HIRLS
466
HPGDA
471
LLSSG
476
SRFAS
481
KVAGL
486
SGCHF
491
Mutation Information
DNA mutation:
None
Peptide Range:
26 ~ 50
Mut AA position:
38 (13 in Wild Type peptide)
Alignment
Wild Type:
"DIDVVGGGSGGGELPARSGPRAPRD
||||||||||||.||||||||||||
Mutant:
DIDVVGGGSGGGGLPARSGPRAPRD"
reference

Science, 2015

Immunogenicity of somatic mutations in human gastrointestinal cancers

Gene Name (from Reference) FOXD2

clinic trial
Checkpoint Blockade

None

ACT

None

Vaccination

None

Curative Effect

None

experiment
minimal_peptide

None

Antigen Type

TMG RNA

T-cell Source

TILs

APC Type

None

Assay

IFNg ELISPOT assay