Immunogenicity 9894

summary
Sample ID
3812
Response
Negative
Tumor Type
Bile duct cancer
Gene Symbol
PNKD
Transcript ID
ENST00000258362
HLA INFO
DRB*13:01
TCR INFO

No TCR info found!

T cell Tumor cell DRB*13:01
sequence
Full length protein sequence (361 aa)
MAWQG
1
WPAAW
6
QWVAG
11
CWLLL
16
VLVLV
21
LLVSP
26
RGCRA
31
RRGLR
36
GLLMA
41
HSQRL
46
LFRIG
51
YSLYT
56
RTWLG
61
YLFYR
66
QQLRR
71
ARNRY
76
PKGHS
81
KTQPR
86
LFNGV
91
KVLPI
96
PVLSD
101
NYSYL
106
IIDTQ
111
AQLAV
116
AVDPS
121
DPRAV
126
QASIE
131
KEGVT
136
LVAIL
141
CTHKH
146
WDHSG
151
GNRDL
156
SRRHR
161
DCRVY
166
GSPQD
171
GIPYL
176
THPLC
181
HQDVV
186
SVGRL
191
QIRAL
196
ATPGH
201
TQGHL
206
VYLLD
211
GEPYK
216
GPSCL
221
FSGDL
226
LFLSG
231
CGRTF
236
EGNAE
241
TMLSS
246
LDTVL
251
GLGDD
256
TLLWP
261
GHEYA
266
EENLG
271
FAGVV
276
EPENL
281
ARERK
286
MQWVQ
291
RQRLE
296
RKGTC
301
PSTLG
306
EERSY
311
NPFLR
316
THCLA
321
LQEAL
326
GPGPG
331
PTGDD
336
DYSRA
341
QLLEE
346
LRRLK
351
DMHKS
356
K
361
Mutation Information
DNA mutation:
None
Peptide Range:
301 ~ 325
Mut AA position:
313 (13 in Wild Type peptide)
Alignment
Wild Type:
"RKGTCPSTLGEERSYNPFLRTHCLA
||||||||||||.||||||||||||
Mutant:
RKGTCPSTLGEELSYNPFLRTHCLA"
reference

Science, 2015

Immunogenicity of somatic mutations in human gastrointestinal cancers

Gene Name (from Reference) PNKD

clinic trial
Checkpoint Blockade

None

ACT

None

Vaccination

None

Curative Effect

None

experiment
minimal_peptide

None

Antigen Type

TMG RNA

T-cell Source

TILs

APC Type

None

Assay

IFNg ELISPOT assay