Immunogenicity 1338

summary
Sample ID
3971
Response
Negative
Tumor Type
Colon cancer
Gene Symbol
NPEPPS
Transcript ID
ENST00000527964
HLA INFO
DQA*05:01 / DQB*06:03
TCR INFO

No TCR info found!

T cell Tumor cell { DQA*05:01 DQB*06:03
sequence
Full length protein sequence (158 aa)
MENWG
1
LVTYR
6
ETALL
11
IDPKN
16
SCSSS
21
RQWVA
26
LVVGH
31
ELAHQ
36
WFGNL
41
VTMEW
46
WTHLW
51
LNEGF
56
ASWIE
61
YLCVD
66
HCFPE
71
YDIWT
76
QFVSA
81
DYTRA
86
QELDA
91
LDNSH
96
PIEVS
101
VGHPS
106
EVDEI
111
FDAIS
116
YSKGA
121
SVIRM
126
LHDYI
131
GDKDF
136
KKGMN
141
MYLTK
146
FQQKN
151
AAT
156
Mutation Information
DNA mutation:
None
Peptide Range:
104 ~ 128
Mut AA position:
116 (13 in Wild Type peptide)
Alignment
Wild Type:
"VSVGHPSEVDEIFDAISYSKGASVI
||||||||||||.||||||||||||
Mutant:
VSVGHPSEVDEICDAISYSKGASVI"
reference

Science, 2015

Immunogenicity of somatic mutations in human gastrointestinal cancers

Gene Name (from Reference) NPEPPS

clinic trial
Checkpoint Blockade

None

ACT

None

Vaccination

None

Curative Effect

None

experiment
minimal_peptide

None

Antigen Type

TMG RNA

T-cell Source

TILs

APC Type

autologous DCs

Assay

IFNg ELISPOT assay