Immunogenicity 3112

summary
Sample ID
4069
Response
Negative
Tumor Type
Pancreatic cancer
Gene Symbol
CDH13
Transcript ID
uc010vnu.2
HLA INFO
A*26:01
TCR INFO

No TCR info found!

T cell Tumor cell A*26:01
sequence
Full length protein sequence (674 aa)
MQPRT
1
PLVLC
6
VLLSQ
11
VLLLT
16
SAEDL
21
DCTPG
26
FQQKV
31
FHINQ
36
PAEFI
41
EDQSI
46
LNLTF
51
SDCKG
56
NDKLR
61
YEVSS
66
PYFKV
71
NSDGG
76
LVALR
81
NITAV
86
GKTLF
91
VHART
96
PHAED
101
MAELV
106
IVGGK
111
DIQGS
116
LQVVD
121
SDRPE
126
RSKFR
131
LTGKG
136
VDQEP
141
KGIFR
146
INENT
151
GSVSV
156
TRTLD
161
REVIA
166
VYQLF
171
VETTD
176
VNGKT
181
LEGPV
186
PLEVI
191
VIDQN
196
DNRPI
201
FREGP
206
YIGHV
211
MEGSP
216
TGTTV
221
MRMTA
226
FDADD
231
PATDN
236
ALLRY
241
NIRQQ
246
TPDKP
251
SPNMF
256
YIDPE
261
KGDIV
266
TVVSP
271
ALLDR
276
ETLEN
281
PKYEL
286
IIEAQ
291
DMAGL
296
DVGLT
301
GTATA
306
TIMID
311
DKNDH
316
SPKFT
321
KKEFQ
326
ATVEE
331
GAVGV
336
IVNLT
341
VEDKD
346
DPTTG
351
AWRAA
356
YTIIN
361
GNPGQ
366
SFEIH
371
TNPQT
376
NEGML
381
SVVKP
386
LDYEI
391
SAFHT
396
LLIKV
401
ENEDP
406
LVPDV
411
SYGPS
416
STATV
421
HITVL
426
DVNEG
431
PVFYP
436
DPMMV
441
TRQED
446
LSVGS
451
VLLTV
456
NATDP
461
DSLQH
466
QTIRY
471
SVYKD
476
PAGWL
481
NINPI
486
NGTVD
491
TTAVL
496
DRESP
501
FVDNS
506
VYTAL
511
FLAID
516
SGNPP
521
ATGTG
526
TLLIT
531
LEDVN
536
DNAPF
541
IYPTV
546
AEVCD
551
DAKNL
556
SVVIL
561
GASDK
566
DLHPN
571
TDPFK
576
FEIHK
581
QAVPD
586
KVWKI
591
SKINN
596
THALV
601
SLLQN
606
LNKAN
611
YNLPI
616
MVTDS
621
GKPPM
626
TNITD
631
LRVQV
636
CSCRN
641
SKVDC
646
NAAGA
651
LRFSL
656
PSVLL
661
LSLFS
666
LACL
671
Mutation Information
DNA mutation:
None
Peptide Range:
451 ~ 475
Mut AA position:
463 (13 in Wild Type peptide)
Alignment
Wild Type:
"LSVGSVLLTVNATDPDSLQHQTIRY
||||||||||||.||||||||||||
Mutant:
LSVGSVLLTVNAMDPDSLQHQTIRY"
reference

Science, 2015

Immunogenicity of somatic mutations in human gastrointestinal cancers

Gene Name (from Reference) CDH13

clinic trial
Checkpoint Blockade

None

ACT

None

Vaccination

None

Curative Effect

None

experiment
minimal_peptide

None

Antigen Type

TMG RNA

T-cell Source

TILs

APC Type

autologous DCs

Assay

IFNg ELISPOT assay