Immunogenicity 3500

summary
Sample ID
4069
Response
Negative
Tumor Type
Pancreatic cancer
Gene Symbol
COL6A1
Transcript ID
uc002zhv.1
HLA INFO
B*52:01
TCR INFO

No TCR info found!

T cell Tumor cell B*52:01
sequence
Full length protein sequence (359 aa)
MQEHV
1
SLRSP
6
SIRNV
11
QELKE
16
AIKSL
21
QWMAG
26
GTFTG
31
EALQY
36
TRDQL
41
LPPSP
46
NNRIA
51
LVITD
56
GRSDT
61
QRDTT
66
PLNVL
71
CSPGI
76
QVVSV
81
GIKDV
86
FDFIP
91
GSDQL
96
NVISC
101
QGLAP
106
SQGRP
111
GLSLV
116
KENYA
121
ELLED
126
AFLKN
131
VTAQI
136
CIDKK
141
CPDYT
146
CPITF
151
SSPAD
156
ITILL
161
DGSAS
166
VGSHN
171
FDTTK
176
RFAKR
181
LAERF
186
LTAGR
191
TDPAH
196
DVRVA
201
VVQYS
206
GTGQQ
211
RPERA
216
SLQFL
221
QNYTA
226
LASAV
231
DAMDF
236
INDAT
241
DVNDA
246
LGYVT
251
RFYRE
256
ASSGA
261
AKKRL
266
LLFSD
271
GNSQG
276
ATPAA
281
IEKAV
286
QEAQR
291
AGIEI
296
FVVVV
301
GRQVN
306
EPHIR
311
VLVTG
316
KTAEY
321
DVAYG
326
ESHLF
331
RVPSY
336
QALLR
341
GVFHQ
346
TVSRK
351
VALG
356
Mutation Information
DNA mutation:
None
Peptide Range:
201 ~ 225
Mut AA position:
213 (13 in Wild Type peptide)
Alignment
Wild Type:
"DVRVAVVQYSGTGQQRPERASLQFL
||||||||||||.||||||||||||
Mutant:
DVRVAVVQYSGTDQQRPERASLQFL"
reference

Science, 2015

Immunogenicity of somatic mutations in human gastrointestinal cancers

Gene Name (from Reference) COL6A1

clinic trial
Checkpoint Blockade

None

ACT

None

Vaccination

None

Curative Effect

None

experiment
minimal_peptide

None

Antigen Type

TMG RNA

T-cell Source

TILs

APC Type

autologous DCs

Assay

IFNg ELISPOT assay