Immunogenicity 4574

summary
Sample ID
4007
Response
Negative
Tumor Type
Colon cancer
Gene Symbol
PSG3
Transcript ID
NM_021016
HLA INFO
A*03:01
TCR INFO

No TCR info found!

T cell Tumor cell A*03:01
sequence
Full length protein sequence (428 aa)
MGPLS
1
APPCT
6
QRITW
11
KGLLL
16
TALLL
21
NFWNL
26
PTTAQ
31
VTIEA
36
EPTKV
41
SKGKD
46
VLLLV
51
HNLPQ
56
NLAGY
61
IWYKG
66
QMKDL
71
YHYIT
76
SYVVD
81
GQIII
86
YGPAY
91
SGRET
96
VYSNA
101
SLLIQ
106
NVTRE
111
DAGSY
116
TLHIV
121
KRGDG
126
TRGET
131
GHFTF
136
TLYLE
141
TPKPS
146
ISSSN
151
LYPRE
156
DMEAV
161
SLTCD
166
PETPD
171
ASYLW
176
WMNGQ
181
SLPMT
186
HSLQL
191
SKNKR
196
TLFLF
201
GVTKY
206
TAGPY
211
ECEIR
216
NPVSA
221
SRSDP
226
VTLNL
231
LPKLP
236
KPYIT
241
INNLN
246
PRENK
251
DVLAF
256
TCEPK
261
SENYT
266
YIWWL
271
NGQSL
276
PVSPR
281
VKRPI
286
ENRIL
291
ILPSV
296
TRNET
301
GPYQC
306
EIQDR
311
YGGIR
316
SYPVT
321
LNVLY
326
GPDLP
331
RIYPS
336
FTYYH
341
SGENL
346
YLSCF
351
ADSNP
356
PAEYS
361
WTING
366
KFQLS
371
GQKLF
376
IPQIT
381
TKHSG
386
LYACS
391
VRNSA
396
TGMES
401
SKSMT
406
VKVSA
411
PSGTG
416
HLPGL
421
NPL
426
Mutation Information
DNA mutation:
None
Peptide Range:
1 ~ 30
Mut AA position:
11 (11 in Wild Type peptide)
Alignment
Wild Type:
"MGPLSAPPCTQRITWKGLLLTALLL-----
||||||||||..|||||.|||||||
Mutant:
MGPLSAPPCTHLITWKGVLLTALLLNFWNL"
reference

Science, 2015

Immunogenicity of somatic mutations in human gastrointestinal cancers

Gene Name (from Reference) PSG3

clinic trial
Checkpoint Blockade

None

ACT

None

Vaccination

None

Curative Effect

None

experiment
minimal_peptide

None

Antigen Type

TMG RNA

T-cell Source

TILs

APC Type

autologous DCs

Assay

IFNg ELISPOT assay