Immunogenicity 4580

summary
Sample ID
4007
Response
Negative
Tumor Type
Colon cancer
Gene Symbol
KRTAP5-3
Transcript ID
NM_001012708
HLA INFO
DRB*15:01
TCR INFO

No TCR info found!

T cell Tumor cell DRB*15:01
sequence
Full length protein sequence (238 aa)
MGCSG
1
CSGGC
6
GSSCG
11
GCGSS
16
CGGCG
21
SGYGG
26
CGSGC
31
CVPVC
36
CCKPV
41
CCCVP
46
ACSCS
51
SCGSC
56
GGSKG
61
VCGSC
66
GGCKG
71
GCGSC
76
GGSKG
81
GCGSS
86
CCVPV
91
CCSSS
96
CGSCG
101
GSKGV
106
CGFRG
111
GSKGG
116
CGSCG
121
CSQCS
126
CYKPC
131
CCSSG
136
CGSSC
141
CQSSC
146
CKPSC
151
SQSSC
156
CKPCC
161
SQSSC
166
CKPCC
171
CSSGC
176
GSSCC
181
QSSCC
186
KPCCS
191
QSSCC
196
KPCCC
201
SSGCG
206
SSCCQ
211
SSCCK
216
PCSSQ
221
SSCCV
226
PICCQ
231
CKI
236
Mutation Information
DNA mutation:
None
Peptide Range:
67 ~ 91
Mut AA position:
79 (13 in Wild Type peptide)
Alignment
Wild Type:
"CGSCGGCKGGCGSCGGSKGGCGSSC
||||||||||||.||||||||||||
Mutant:
CGSCGGCKGGCGACGGSKGGCGSSC"
reference

Science, 2015

Immunogenicity of somatic mutations in human gastrointestinal cancers

Gene Name (from Reference) KRTAP5-3

clinic trial
Checkpoint Blockade

None

ACT

None

Vaccination

None

Curative Effect

None

experiment
minimal_peptide

None

Antigen Type

TMG RNA

T-cell Source

TILs

APC Type

autologous DCs

Assay

IFNg ELISPOT assay