Immunogenicity 5166
Sample ID
3995
Response
Negative
Tumor Type
Colon cancer
Gene Symbol
PABPC3
Transcript ID
NM_030979
HLA INFO
A*32:01
TCR INFO
No TCR info found!
Full length protein sequence (631 aa)
MNPST
1
PSYPT
6
ASLYV
11
GDLHP
16
DVTEA
21
MLYEK
26
FSPAG
31
PILSI
36
RICRD
41
LITSG
46
SSNYA
51
YVNFQ
56
HTKDA
61
EHALD
66
TMNFD
71
VIKGK
76
PVRIM
81
WSQRD
86
PSLRK
91
SGVGN
96
IFVKN
101
LDKSI
106
NNKAL
111
YDTVS
116
AFGNI
121
LSCNV
126
VCDEN
131
GSKGY
136
GFVHF
141
ETHEA
146
AERAI
151
KKMNG
156
MLLNG
161
RKVFV
166
GQFKS
171
RKERE
176
AELGA
181
RAKEF
186
PNVYI
191
KNFGE
196
DMDDE
201
RLKDL
206
FGKFG
211
PALSV
216
KVMTD
221
ESGKS
226
KGFGF
231
VSFER
236
HEDAQ
241
KAVDE
246
MNGKE
251
LNGKQ
256
IYVGR
261
AQKKV
266
ERQTE
271
LKRTF
276
EQMKQ
281
DRITR
286
YQVVN
291
LYVKN
296
LDDGI
301
DDERL
306
RKAFS
311
PFGTI
316
TSAKV
321
MMEGG
326
RSKGF
331
GFVCF
336
SSPEE
341
ATKAV
346
TEMNG
351
RIVAT
356
KPLYV
361
ALAQR
366
KEERQ
371
AYLTN
376
EYMQR
381
MASVR
386
AVPNQ
391
RAPPS
396
GYFMT
401
AVPQT
406
QNHAA
411
YYPPS
416
QIARL
421
RPSPR
426
WTAQG
431
ARPHP
436
FQNKP
441
SAIRP
446
GAPRV
451
PFSTM
456
RPASS
461
QVPRV
466
MSTQR
471
VANTS
476
TQTVG
481
PRPAA
486
AAAAA
491
ATPAV
496
RTVPR
501
YKYAA
506
GVRNP
511
QQHRN
516
AQPQV
521
TMQQL
526
AVHVQ
531
GQETL
536
TASRL
541
ASAPP
546
QKQKQ
551
MLGER
556
LFPLI
561
QAMHP
566
TLAGK
571
ITGML
576
LEIDN
581
SELLY
586
MLESP
591
ESLRS
596
KVDEA
601
VAVLQ
606
AHQAK
611
EATQK
616
AVNSA
621
TGVPT
626
V
631
Mutation Information
DNA mutation:
None
Peptide Range:
585 ~ 609
Mut AA position:
597 (13 in Wild Type peptide)
Alignment
Wild Type:
"NSELLYMLESPESLRSKVDEAVAVL
||||||||||||.||||||||||||
Mutant:
NSELLYMLESPELLRSKVDEAVAVL"
Science, 2015
Immunogenicity of somatic mutations in human gastrointestinal cancersGene Name (from Reference) PABPC3
Checkpoint
Blockade
None
ACT
None
Vaccination
None
Curative
Effect
None
minimal_peptide
None
Antigen
Type
TMG RNA
T-cell
Source
TILs
APC
Type
autologous DCs
Assay
IFNg ELISPOT assay