Immunogenicity 5407

summary
Sample ID
4007
Response
Negative
Tumor Type
Colon cancer
Gene Symbol
CFAP77
Transcript ID
NM_207417
HLA INFO
DQA*01:02 / DQB*06:02
TCR INFO

No TCR info found!

T cell Tumor cell { DQA*01:02 DQB*06:02
sequence
Full length protein sequence (320 aa)
MPEAR
1
SSGPD
6
LTRWR
11
KQQQP
16
VRRTV
21
SQVCP
26
PPRRP
31
LTVAD
36
IRSGM
41
ENERL
46
GVVRD
51
SMFQN
56
PLIVK
61
AAGPA
66
SVGTS
71
YSVYD
76
SSAVQ
81
KVIPS
86
LAGHH
91
IKGGP
96
QAELG
101
KPRER
106
SYSLP
111
GINFN
116
YGLYI
121
RGLDG
126
GVPEA
131
IGRWN
136
VFKQQ
141
PTCPH
146
ELTRN
151
YIAMN
156
RGAVK
161
AGLVT
166
ARENL
171
LYRQL
176
NDIRI
181
SDQDD
186
RRMKK
191
EPPPL
196
PPNMT
201
FGIRA
206
RPSTP
211
FFDLL
216
QHRYL
221
QLWVQ
226
EQKAT
231
QKAIK
236
LEKKQ
241
KVVLG
246
KLYET
251
RSSQL
256
RKYKP
261
PVKLD
266
TLWHM
271
PHFQK
276
VGRHL
281
DTFPT
286
EADRQ
291
RALKA
296
HREEC
301
AVRQG
306
TLRMG
311
NYTHP
316
Mutation Information
DNA mutation:
None
Peptide Range:
307 ~ 320
Mut AA position:
319 (13 in Wild Type peptide)
Alignment
Wild Type:
"VRQGTLRMGNYTHP
||||||||||||.|
Mutant:
VRQGTLRMGNYTPP"
reference

Science, 2015

Immunogenicity of somatic mutations in human gastrointestinal cancers

Gene Name (from Reference) C9orf171

clinic trial
Checkpoint Blockade

None

ACT

None

Vaccination

None

Curative Effect

None

experiment
minimal_peptide

None

Antigen Type

TMG RNA

T-cell Source

TILs

APC Type

autologous DCs

Assay

IFNg ELISPOT assay