Immunogenicity 6938

summary
Sample ID
3948
Response
Negative
Tumor Type
Esophageal cancer
Gene Symbol
FPR1
Transcript ID
NM_001193306
HLA INFO
DQA*01:02 / DQB*06:01
TCR INFO

No TCR info found!

T cell Tumor cell { DQA*01:02 DQB*06:01
sequence
Full length protein sequence (350 aa)
METNS
1
SLPTN
6
ISGGT
11
PAVSA
16
GYLFL
21
DIITY
26
LVFAV
31
TFVLG
36
VLGNG
41
LVIWV
46
AGFRM
51
THTVT
56
TISYL
61
NLAVA
66
DFCFT
71
STLPF
76
FMVRK
81
AMGGH
86
WPFGW
91
FLCKF
96
VFTIV
101
DINLF
106
GSVFL
111
IALIA
116
LDRCV
121
CVLHP
126
VWTQN
131
HRTVS
136
LAKKV
141
IIGPW
146
VMALL
151
LTLPV
156
IIRVT
161
TVPGK
166
TGTVA
171
CTFNF
176
SPWTN
181
DPKER
186
INVAV
191
AMLTV
196
RGIIR
201
FIIGF
206
SAPMS
211
IVAVS
216
YGLIA
221
TKIHK
226
QGLIK
231
SSRPL
236
RVLSF
241
VAAAF
246
FLCWS
251
PYQVV
256
ALIAT
261
VRIRE
266
LLQGM
271
YKEIG
276
IAVDV
281
TSALA
286
FFNSC
291
LNPML
296
YVFMG
301
QDFRE
306
RLIHA
311
LPASL
316
ERALT
321
EDSTQ
326
TSDTA
331
TNSTL
336
PSAEV
341
ELQAK
346
Mutation Information
DNA mutation:
None
Peptide Range:
19 ~ 43
Mut AA position:
31 (13 in Wild Type peptide)
Alignment
Wild Type:
"SAGYLFLDIITYLVFAVTFVLGVLG
||||||||||||.||||||||||||
Mutant:
SAGYLFLDIITYVVFAVTFVLGVLG"
reference

Science, 2015

Immunogenicity of somatic mutations in human gastrointestinal cancers

Gene Name (from Reference) FPR1

clinic trial
Checkpoint Blockade

None

ACT

None

Vaccination

None

Curative Effect

None

experiment
minimal_peptide

None

Antigen Type

TMG RNA

T-cell Source

TILs

APC Type

autologous DCs

Assay

IFNg ELISPOT assay