Immunogenicity 8393

summary
Sample ID
4007
Response
Negative
Tumor Type
Colon cancer
Gene Symbol
CEP78
Transcript ID
NM_032171
HLA INFO
B*07:02
TCR INFO

No TCR info found!

T cell Tumor cell B*07:02
sequence
Full length protein sequence (706 aa)
MIDSV
1
KLRRD
6
SAADF
11
FSHYE
16
YLCAL
21
QNSVP
26
LPAVR
31
ACLRE
36
GVLDF
41
NADRL
46
RGVDW
51
APLLS
56
TLKIN
61
KDLPL
66
VSIKS
71
FFQPW
76
LGDTG
81
SDMNK
86
FCRSR
91
VPAIR
96
YKDVT
101
FQLCK
106
ALKGC
111
LSISS
116
VLKNL
121
ELNGL
126
ILRER
131
DLTIL
136
AKGLN
141
KSASL
146
VHLSL
151
ANCPI
156
GDGGL
161
EIICQ
166
GIKSS
171
ITLKT
176
VNFTG
181
CNLTW
186
QGADH
191
MAKIL
196
KYQTM
201
RRHEE
206
TWAES
211
LRYRR
216
PDLDC
221
MAGLR
226
RITLN
231
CNTLI
236
GDLGA
241
CAFAD
246
SLSED
251
LWLRA
256
LDLQQ
261
CGLTN
266
EGAKA
271
LLEAL
276
ETNTT
281
LVVLD
286
IRKNP
291
LIDHS
296
MMKAV
301
IKKVL
306
QNGRS
311
AKSEY
316
QWITS
321
PSVKE
326
PSKTA
331
KQKRR
336
TIILG
341
SGHKG
346
KATIR
351
IVGLA
356
TKKPV
361
SSGRK
366
HSLGK
371
EYYAP
376
APLPP
381
GVSGF
386
LPWRT
391
AERAK
396
RHRGF
401
PLIKT
406
RDICN
411
QLQQP
416
GFPVT
421
VTVES
426
PSSSE
431
VEEVD
436
DSSES
441
VHEVP
446
EKTSI
451
EQEAL
456
QEKLE
461
ECLKQ
466
LKEER
471
VIRLK
476
VDKRV
481
SELEH
486
ENAQL
491
RNINF
496
SLSEA
501
LHAQS
506
LTNMI
511
LDDEG
516
VLGSI
521
ENSFQ
526
KFHAF
531
LDLLK
536
DAGLG
541
QLATM
546
AGIDQ
551
SDFQL
556
LGHPQ
561
MTSTV
566
SNPPK
571
EEKKA
576
LEDEK
581
PEPKQ
586
NALGQ
591
MQNIQ
596
FQKIT
601
GDARI
606
PLPLD
611
SFPVP
616
VSTPE
621
GLGTS
626
SNNLG
631
VPATE
636
QRQES
641
FEGFI
646
ARMCS
651
PSPDA
656
TSGTG
661
SQRKE
666
EELSR
671
NSRSS
676
SEKKT
681
KTGEY
686
TKKHS
691
DKQHP
696
GKDLH
701
S
706
Mutation Information
DNA mutation:
None
Peptide Range:
82 ~ 106
Mut AA position:
94 (13 in Wild Type peptide)
Alignment
Wild Type:
"GDTGSDMNKFCRSRVPAIRYKDVTF
||||||||||||.||||||||||||
Mutant:
GDTGSDMNKFCRRRVPAIRYKDVTF"
reference

Science, 2015

Immunogenicity of somatic mutations in human gastrointestinal cancers

Gene Name (from Reference) CEP78

clinic trial
Checkpoint Blockade

None

ACT

None

Vaccination

None

Curative Effect

None

experiment
minimal_peptide

None

Antigen Type

TMG RNA

T-cell Source

TILs

APC Type

autologous DCs

Assay

IFNg ELISPOT assay