Immunogenicity 886

summary
Sample ID
3942
Response
Negative
Tumor Type
Rectal cancer
Gene Symbol
FNDC9
Transcript ID
ENST00000312349
HLA INFO
DRB*07:01
TCR INFO

No TCR info found!

T cell Tumor cell DRB*07:01
sequence
Full length protein sequence (224 aa)
MNIEV
1
GNISY
6
TGAII
11
SWSSS
16
EPCLE
21
DYYHI
26
MYRPN
31
WNSIF
36
SGYLR
41
YSFHH
46
EEKVP
51
RTISS
56
VVLEH
61
LAPST
66
LYFLC
71
ISCKK
76
AAFPY
81
RHYCT
86
MFHTL
91
DKSPL
96
APGSS
101
LVDPQ
106
ISLWV
111
LMAIL
116
LACFT
121
AVLAF
126
ICLQF
131
WCVRC
136
HEPRW
141
SYRAG
146
HMEEA
151
NGLVR
156
WPEEA
161
PDLGQ
166
REEDL
171
QGLPL
176
VEMPR
181
KNSRD
186
GAELD
191
PEANQ
196
DAPDA
201
GALQR
206
GGGDP
211
PAILP
216
HCGE
221
Mutation Information
DNA mutation:
None
Peptide Range:
65 ~ 89
Mut AA position:
77 (13 in Wild Type peptide)
Alignment
Wild Type:
"HLAPSTLYFLCISCKKAAFPYRHYC
||||||||||||.||||||||||||
Mutant:
HLAPSTLYFLCITCKKAAFPYRHYC"
reference

Science, 2015

Immunogenicity of somatic mutations in human gastrointestinal cancers

Gene Name (from Reference) FNDC9

clinic trial
Checkpoint Blockade

None

ACT

None

Vaccination

None

Curative Effect

None

experiment
minimal_peptide

None

Antigen Type

TMG RNA

T-cell Source

TILs

APC Type

autologous DCs

Assay

IFNg ELISPOT assay